4. Getting an induced subtree of all taxa within a taxonomic rank
Overview
Teaching: 5 min
Exercises: 5 minQuestions
How do I get all taxa from a certain rank?
Objectives
Get an induced subtree from all taxa of a certain taxonomic rank.
There is not a specific function to get all taxa from a given rank.
Of course, we can always hack our way through it.
In the package datelife, we have implemented a function called get_ott_children(), that extracts OTT ids of all taxa from a rank specified by the argument ott_rank.
Let’s get all amphibian families.
amphibia_families <- datelife::get_ott_children(ott_ids = resolved_names["Amphibia",]$ott_id, ott_rank = "family")
Now, get the induced subtree using the amphibian families’ OTT ids.
amphibia_families_subtree <- rotl::tol_induced_subtree(amphibia_families$Amphibia$ott_id)
Look at the output.
amphibia_families_subtree
Phylogenetic tree with 61 tips and 58 internal nodes.
Tip labels:
Ranidae_ott364560, Rhacophoridae_ott432783, Mantellidae_ott38969, Dicroglossidae_ott1081208, Ranixalidae_ott403946, Nyctibatrachidae_ott1081210, ...
Node labels:
Amphibia ott544595, Batrachia ott471197, Anura ott991547, mrcaott114ott3129, mrcaott114ott37876, mrcaott114ott18818, ...
Rooted; no branch lengths.
ape::plot.phylo(amphibia_families_subtree, cex = 1.2)
Super cool!
Hands on! Get a family subtree without ott ids in the tip labels
Hint: Look at the arguments of function
tol_induced_subtree()Solution
amphibia_families_subtree2 <- rotl::tol_induced_subtree(amphibia_families$Amphibia$ott_id, label_format = "name")Warning in collapse_singles(tr, show_progress): Dropping singleton nodes with labels: mrcaott114ott391676, mrcaott22019ott241869, mrcaott22583ott100573, mrcaott22583ott44382, mrcaott44382ott72638, mrcaott44382ott100564, mrcaott65695ott254163, mrcaott65695ott121259, mrcaott2199ott411156, mrcaott7464ott21502, mrcaott21502ott918196, Pelobatoidea, mrcaott18818ott47772, Sirenoidea, mrcaott154777ott464898, mrcaott464898ott540102ape::plot.phylo(amphibia_families_subtree2, cex = 1.2)
Hack: Get all taxa from a taxonomic rank.
There are several ways to do this using
rotlfunctions only. Try it out!Look at a possible solution
amphibia_taxonomy <- rotl::taxonomy_subtree(resolved_names["Amphibia",]$ott_id) ls(amphibia_taxonomy)[1] "edge_label" "tip_label"length(amphibia_taxonomy$tip_label)[1] 14156head(amphibia_taxonomy$tip_label)[1] "Caecilia_tentaculata_ott540102" "unclassified_Caecilia_ott7667087" [3] "Caecilia_gracilis_ott3617882" "Caecilia_volcani_ott923510" [5] "Caecilia_sp._ott9109" "Caeciliasp.KR-2007ott154780"tail(amphibia_taxonomy$tip_label)[1] "Aistopoda_ott5326022" [2] "Nectridea_ott5326000" [3] "Diadectomorpha_ott5326029" [4] "'Cheliderpeton(genusinDeuterostomia" [5] "'Sclerocephalus(genusinDeuterostomia" [6] "Ichthyostegalia_ott5326052"amphibia_taxonomy$edge_label[1] "'Caecilia(genusinDeuterostomia" [2] "ott9110'" [3] "Oscaecilia_ott654632" [4] "Mimosiphonops_ott3617932" [5] "Nectocaecilia_ott3617935" [6] "Sylvacaecilia_ott3617918" [7] "Parvicaecilia_ott3617941" [8] "Apodops_ott4132583" [9] "Caeciliidae_ott118029" [10] "Typhlonectes_ott639646" [11] "Chthonerpeton_ott633052" [12] "Atretochoana_ott3617929" [13] "Potamotyphlus_ott7667119" [14] "Typhlonectidae_ott639647" [15] "Ichthyophis_ott639652" [16] "Uraeotyphlus_ott498526" [17] "Caudacaecilia_ott831465" [18] "Bdellophis_ott4132629" [19] "Ichthyophiidae_ott639653" [20] "Dermophis_ott197731" [21] "Geotrypetes_ott283384" [22] "Schistometopum_ott568515" [23] "Gymnopis_ott80539" [24] "Dermophiidae_ott654645" [25] "Epicrionops_ott840081" [26] "Rhinatrema_ott498525" [27] "Rhinatrematidae_ott128153" [28] "Grandisonia_ott118032" [29] "Hypogeophis_ott118055" [30] "Gegeneophis_ott227124" [31] "Praslinia_ott80530" [32] "Indotyphlus_ott479403" [33] "Idiocranium_ott3617923" [34] "Indotyphlidae_ott114139" [35] "Microcaecilia_ott654633" [36] "Siphonops_ott80529" [37] "Brasilotyphlus_ott3617930" [38] "Luetkenotyphlus_ott479420" [39] "Siphonopidae_ott114359" [40] "Scolecomorphus_ott47815" [41] "Crotaphatrema_ott21512" [42] "Scolecomorphidae_ott861429" [43] "Boulengerula_ott42295" [44] "Herpele_ott77667" [45] "Herpelidae_ott379929" [46] "Chikila_ott5758907" [47] "Chikilidae_ott4948197" [48] "Wesserpeton_ott6159232" [49] "Albanerpeton_ott3617926" [50] "Anoualerpeton_ott3621326" [51] "Celtedens_ott3621303" [52] "Albanerpetontidae_ott3617924" [53] "Eocaecilia_ott4132637" [54] "Eocaeciliaidae_ott3617936" [55] "Rubricacaecilia_ott3617946" [56] "Gymnophiona_ott118027" [57] "Plethodon_ott515349" [58] "Karsenia_ott893551" [59] "Desmognathus_ott1050144" [60] "Ensatina_eschscholtzii_ott637537" [61] "Ensatina_ott64118" [62] "Aneides_ott64140" [63] "Hydromantes_no_rank_Hydromantes_ott693462" [64] "'Atylodes(genusinDeuterostomia" [65] "ott693464'" [66] "Hydromantes_imperialis_ott675243" [67] "Hydromantes_ambrosii_ott953902" [68] "Speleomantes_ott693468" [69] "Hydromantes_ott953899" [70] "Phaeognathus_ott964128" [71] "Plethodontinae_ott798661" [72] "Oeditriton_ott75459" [73] "Oedopinola_ott157731" [74] "Oedipina_subgenus_Oedipina_ott157732" [75] "Oedipina_ott99021" [76] "Cryptotriton_ott99024" [77] "Nototriton_ott99028" [78] "Dendrotriton_ott99034" [79] "Haideotriton_ott133635" [80] "Eladinea_ott3620958" [81] "Bolitoglossa_subgenus_Bolitoglossa_ott5544021" [82] "Nanotriton_ott4132647" [83] "Oaxakia_ott3620672" [84] "Mayamandra_ott3620674" [85] "Magnadigita_ott5544022" [86] "Pachymandra_ott3620664" [87] "Bolitoglossa_ott515331" [88] "Gyrinophilus_porphyriticus_ott1017696" [89] "Gyrinophilus_palleucus_ott790871" [90] "Gyrinophilus_ott1068026" [91] "Hemidactylium_ott798658" [92] "'Stereochilus(genusinOpisthokonta" [93] "ott798664'" [94] "Bradytriton_ott798666" [95] "Aquiloeurycea_ott5800410" [96] "Eurycea_troglodytes_complex_ott133631" [97] "Eurycea_multiplicata_ott839995" [98] "Eurycea_latitans_complex_ott839996" [99] "Eurycea_neotenes_complex_ott5265288" [100] "Eurycea_longicauda_ott534299" [101] "Eurycea_ott1023734" [102] "Parvimolge_ott46159" [103] "Ixalotriton_ott46161" [104] "Batrachoseps_ott64143" [105] "Urspelerpes_ott890499" [106] "Thorius_ott224304" [107] "Nyctanolis_ott224306" [108] "Chiropterotriton_ott224307" [109] "Isthmura_bellii_ott46162" [110] "Isthmura_sierraoccidentalis_ott98841" [111] "Isthmura_ott5800409" [112] "Pseudoeurycea_ott174965" [113] "Pseudotriton_montanus_ott401642" [114] "Pseudotriton_ruber_ott1017693" [115] "Pseudotriton_ott1017695" [116] "ott7666946'" [117] "Hemidactyliinae_ott149927" [118] "Hydromantoides_ott4132648" [119] "ott5336221'" [120] "Plethodontidae_ott515329" [121] "Necturus_ott963039" [122] "'Proteus(genusindomainEukaryota" [123] "ott666457'" [124] "Proteidae_ott630300" [125] "Dicamptodon_ott60824" [126] "Chrysotriton_ott4132676" [127] "Dicamptodontidae_ott60819" [128] "Rhyacotriton_ott459009" [129] "Rhyacotritonidae_ott459010" [130] "Lissotriton_boscai_ott830424" [131] "Lissotriton_vulgaris_ott1041774" [132] "Lissotriton_helveticus_ott9366" [133] "Lissotriton_ott389617" [134] "Paramesotriton_ott406723" [135] "Echinotriton_ott698358" [136] "Cynops_cyanurus_ott406736" [137] "Cynops_ott1041765" [138] "Taricha_torosa_ott953897" [139] "Taricha_ott1041792" [140] "Triturus_marmoratus_ott1041767" [141] "Triturus_karelinii_ott1041769" [142] "Triturus_dobrogicus_ott1041781" [143] "Triturus_carnifex_ott1041783" [144] "Triturus_ott1041799" [145] "Neurergus_strauchii_ott288025" [146] "Neurergus_ott288029" [147] "Ichthyosaura_alpestris_ott159060" [148] "Ichthyosaura_ott835314" [149] "Laotriton_ott4948201" [150] "Tylototriton_verrucosus_ott932561" [151] "Tylototriton_subgenus_Tylototriton_ott175813" [152] "Tylototriton_wenxianensis_ott981376" [153] "Yaotriton_ott175815" [154] "Tylototriton_ott456815" [155] "Pachytriton_ott499077" [156] "Notophthalmus_meridionalis_ott1031751" [157] "Notophthalmus_ott566013" [158] "Pleurodeles_waltl_ott566038" [159] "Pleurodeles_ott566021" [160] "Ommatotriton_ophryticus_ott645229" [161] "Ommatotriton_vittatus_ott865707" [162] "Ommatotriton_ott645233" [163] "Calotriton_ott793904" [164] "Euproctus_ott861431" [165] "Pleurodelinae_ott4948200" [166] "Salamandra_algira_ott308113" [167] "Salamandra_salamandra_ott689975" [168] "Salamandra_atra_ott689978" [169] "Salamandra_infraimmaculata_ott1024870" [170] "Salamandra_ott115714" [171] "Mertensiella_ott1066558" [172] "Chioglossa_ott499080" [173] "Lyciasalamandra_luschani_ott1012890" [174] "Lyciasalamandra_antalyana_ott1024875" [175] "Lyciasalamandra_fazilae_ott1024882" [176] "Lyciasalamandra_billae_ott1024889" [177] "Lyciasalamandra_ott800960" [178] "Salamandrinae_ott4948209" [179] "Salamandrina_ott674677" [180] "Salamandrininae_ott4948210" [181] "Pingia_ott4132654" [182] "Megalotriton_ott4132653" [183] "Bishara_ott4132664" [184] "Chelotriton_ott4132649" [185] "Oligosemia_ott3620637" [186] "Salamandridae_ott566011" [187] "Amphiuma_ott566025" [188] "Piceoerpeton_ott3620638" [189] "Paleoamphiuma_ott4132667" [190] "Proamphiuma_ott4132669" [191] "Amphiumidae_ott566022" [192] "'Ambystoma''unisexualhybridcomplex''ott203585'" [193] "Ambystoma_tigrinum_ott1092552" [194] "ott7071236'" [195] "Ambystoma_macrodactylum_ott938349" [196] "ott6159010'" [197] "Ambystoma_ott984720" [198] "Amblystoma_ott7666871" [199] "Ambystomatidae_ott984723" [200] "Salamandroidea_ott336747" [201] "Satobius_ott5800418" [202] "Poyarius_ott5800416" [203] "Hynobius_subgenus_Hynobius_ott5800417" [204] "Hynobius_ott953911" [205] "Pseudohynobius_ott1018812" [206] "Salamandrella_ott1021847" [207] "Pachyhynobius_ott1021854" [208] "Batrachuperus_ott101275" [209] "Iranodon_ott7071233" [210] "'Liua(genusinHolozoa" [211] "ott675465'" [212] "Ranodon_ott834698" [213] "Paradactylodon_ott838538" [214] "Onychodactylus_ott887098" [215] "Hynobiidae_ott336749" [216] "Cryptobranchus_alleganiensis_ott534288" [217] "Cryptobranchus_ott534314" [218] "Andrias_ott788372" [219] "Aviturus_ott3621219" [220] "Eoscapherpeton_ott3620822" [221] "Chunerpeton_ott3620515" [222] "Ulanurus_ott3620810" [223] "Cryptobranchidae_ott336750" [224] "Cryptobranchoidea_ott336753" [225] "Pseudobranchus_ott401981" [226] "Siren_intermedia_ott991553" [227] "Siren_ott991556" [228] "Kababisha_ott4132683" [229] "Habrosaurus_ott4132681" [230] "Sirenidae_ott515352" [231] "Sirenoidea_ott336754" [232] "Urupia_ott6376252" [233] "Regalerpeton_ott6376245" [234] "Nesovtriton_ott6376241" [235] "Pangerpeton_ott6376243" [236] "Seminobatrachus_ott6376247" [237] "Beiyanerpeton_ott6138079" [238] "Nasopus_ott7666998" [239] "Sinerpeton_ott3620651" [240] "Horezmia_ott3621060" [241] "Valdotriton_ott3620654" [242] "Jeholotriton_ott3620650" [243] "Kiyatriton_ott3620671" [244] "Liaoxitriton_ott3620675" [245] "Laccotriton_ott3620658" [246] "Iridotriton_ott3620676" [247] "Hemitrypus_ott3620678" [248] "Urodeles_ott7666996" [249] "Heteroclitotriton_ott3621355" [250] "Hylaeobatrachus_ott3620673" [251] "Marmorerpeton_ott3621285" [252] "Scapherpeton_ott4132706" [253] "Lisserpeton_ott4132711" [254] "Scapherpetontidae_ott3620677" [255] "Prodesmodon_ott4132716" [256] "Triassuridae_ott3620648" [257] "Noterpeton_ott4132718" [258] "Noterpetontidae_ott3620653" [259] "Karaurus_ott3620667" [260] "Kokartus_ott4132704" [261] "Karauridae_ott3620668" [262] "Opisthotriton_ott4132698" [263] "'Parrisia(genusinOpisthokonta" [264] "ott4132702'" [265] "Palaeoproteus_ott4132694" [266] "Batrachosauroides_ott4132696" [267] "Peratosauroides_ott4132695" [268] "Batrachosauroididae_ott3620655" [269] "Apricosiren_ott3620652" [270] "Ramonellus_ott4132714" [271] "Prosiren_ott4132713" [272] "Prosirenidae_ott3620660" [273] "Galverpeton_ott3620649" [274] "Caudata_ott984716" [275] "Allophryne_ott57742" [276] "Allophrynidae_ott57740" [277] "Celsiella_ott270773" [278] "Hyalinobatrachium_ott717620" [279] "Hyalinobatrachinae_ott1011638" [280] "Centrolene_ott9102" [281] "Nymphargus_ott467441" [282] "Cochranella_ott57743" [283] "Chimerella_ott434792" [284] "Rulyrana_ott511705" [285] "Teratohyla_ott270772" [286] "Espadarana_ott571380" [287] "Vitreorana_ott571381" [288] "Sachatamia_ott434800" [289] "Cochranellini_ott1011644" [290] "Centroleninae_ott1011645" [291] "Ikakogi_ott942704" [292] "Centrolenidae_ott467442" [293] "Allocentroleniae_ott9105" [294] "Flectonotus_ott580186" [295] "Stefania_ott787132" [296] "Gastrotheca_ott535780" [297] "Cryptobatrachus_ott1091968" [298] "Hemiphractus_ott655571" [299] "Fritziana_ott864397" [300] "Hemiphractidae_ott245330" [301] "Physalaemus_ott414579" [302] "Edalorhina_ott622247" [303] "Pleurodema_ott1032369" [304] "Pseudopaludicola_ott880717" [305] "Engystomops_ott1019408" [306] "Leiuperinae_ott216864" [307] "Lithodytes_ott315881" [308] "Hydrolaetare_ott791392" [309] "Adenomera_ott412180" [310] "Leptodactylus_gracilis_ott1045781" [311] "Leptodactylus_ott1036182" [312] "Leptodactylinae_ott4133298" [313] "Crossodactylodes_ott3620328" [314] "Rupirana_ott3620326" [315] "Scythrophrys_ott462991" [316] "Paratelmatobius_ott989417" [317] "Crossodactylodinae_ott4133299" [318] "ott5336507'" [319] "Arariphrynus_ott6158571" [320] "Physalalemus_ott6158772" [321] "Eorubeta_ott4133313" [322] "Eophractus_ott4133304" [323] "Niedenia_ott4133301" [324] "Indobatrachus_ott4133317" [325] "Neoprocoela_ott4133318" [326] "Phrynocerus_ott3619498" [327] "ott5336509'" [328] "Leptodactylidae_ott414584" [329] "Heleophryne_ott160485" [330] "Hadromophryne_ott971912" [331] "Heleophrynidae_ott127159" [332] "Proceratophrys_ott254172" [333] "Hylorina_ott440882" [334] "Alsodes_ott413976" [335] "Eupsophus_ott519523" [336] "Macrogenioglottus_ott726713" [337] "Odontophrynus_americanus_ott609773" [338] "Odontophrynus_ott1083887" [339] "Alsodidae_ott533096" [340] "Cycloramphus_ott254162" [341] "Zachaenus_ott346406" [342] "Thoropa_ott1008750" [343] "Limnomedusa_ott914517" [344] "Cycloramphidae_ott533097" [345] "Cruziohyla_ott329968" [346] "Agalychnis_ott407256" [347] "Pachymedusa_ott254792" [348] "Pithecopus_ott6158758" [349] "Phyllomedusa_ott364571" [350] "Phrynomedusa_ott528970" [351] "Hylomantis_ott1088100" [352] "Phasmahyla_ott1087177" [353] "Phyllomedusinae_ott245327" [354] "Nyctimystes_ott444690" [355] "Cyclorana_ott580206" [356] "Litoria_ott414588" [357] "Pelodryadinae_ott245328" [358] "Scarthyla_ott72615" [359] "Scinax_ott245332" [360] "Ololygon_ott6155586" [361] "Pseudis_ott1035865" [362] "Dendropsophus_ott206399" [363] "Xenohyla_ott510392" [364] "Sphaenorhynchus_ott1026159" [365] "Dendropsophini_ott678333" [366] "Hypsiboas_ott412457" [367] "Nesorohyla_ott7070190" [368] "Bokermannohyla_ott131345" [369] "Myersiohyla_ott206401" [370] "Hyloscirtus_ott131357" [371] "Boana_ott7070167" [372] "Aplastodiscus_ott570075" [373] "Cophomantini_ott678336" [374] "Osteopilus_ott59134" [375] "VG-2010ott590425'" [376] "Osteocephalus_ott95406" [377] "Itapotihyla_ott257368" [378] "Argenteohyla_siemersi_ott100569" [379] "Argenteohyla_ott578372" [380] "Corythomantis_ott442032" [381] "Nyctimantis_ott1087156" [382] "Tepuihyla_ott510385" [383] "'Phyllodytes(genusinDeuterostomia" [384] "ott185324'" [385] "Aparasphenodon_ott570084" [386] "Trachycephalus_ott291909" [387] "Lophiohylini_ott206403" [388] "Anotheca_ott59159" [389] "Megastomatohyla_ott433685" [390] "Tlalocohyla_ott257366" [391] "Charadrahyla_ott257371" [392] "Ecnomiohyla_ott433687" [393] "Exerodonta_ott257373" [394] "Isthmohyla_ott433695" [395] "Plectrohyla_ott263732" [396] "Ptychohyla_ott263741" [397] "Smilisca_ott315884" [398] "Acris_crepitans_ott59141" [399] "Acris_ott859275" [400] "Dryophytes_ott7070248" [401] "Pseudacris_crucifer_ott747287" [402] "Pseudacris_nigrita_ott80759" [403] "Pseudacris_ott173133" [404] "Triprion_ott238788" [405] "Bromeliohyla_ott729848" [406] "Sarcohyla_ott7070264" [407] "Duellmanohyla_ott148347" [408] "Hyla_annectans_ott655531" [409] "Hyla_arborea_ott677266" [410] "Hyla_ott1062216" [411] "Atlantihyla_ott7070220" [412] "Rheohyla_ott7070262" [413] "Quilticohyla_ott7070260" [414] "Hylini_ott131364" [415] "Hylinae_ott245329" [416] "Dryaderces_ott7666055" [417] "Diaglena_ott3620134" [418] "Proacris_ott4133404" [419] "Australobatrachus_ott3620437" [420] "ott5336513'" [421] "ott5336510'" [422] "Hylidae_ott535782" [423] "Yunganastes_ott558192" [424] "Tachiramantis_ott5810353" [425] "Pristimantis_ott911396" [426] "Oreobates_ott415886" [427] "Strabomantis_ott415907" [428] "Hypodactylus_ott427286" [429] "Lynchius_ott482785" [430] "Niceforonia_ott3620193" [431] "Phrynopus_ott646334" [432] "Strabomantinae_ott199517" [433] "Geobatrachus_ott3620197" [434] "Atopophrynus_ott3620196" [435] "Dischidodactylus_ott3620198" [436] "Strabomantidae_ott199520" [437] "Brachycephalus_ott719425" [438] "Ischnocnema_ott7461" [439] "Brachycephalidae_ott719424" [440] "Insuetophrynus_ott44381" [441] "Rhinoderma_ott566945" [442] "Rhinodermatidae_ott4133476" [443] "Rheobatrachus_ott918195" [444] "Rheobatrachidae_ott918183" [445] "Megaelosia_ott777178" [446] "Crossodactylus_ott777180" [447] "Hylodes_ott304507" [448] "Hylodidae_ott1059295" [449] "Diasporus_ott427881" [450] "Pelorius_ott570532" [451] "Euhyas_ott1091840" [452] "Eleutherodactylus_auriculatus_complex_ott296402" [453] "Eleutherodactylus_subgenus_Eleutherodactylus_ott514824" [454] "Syrrhophus_ott692789" [455] "Eleutherodactylus_ott889366" [456] "Eleutherodactylinae_ott478714" [457] "Phyzelaphryne_ott770925" [458] "Adelophryne_ott497500" [459] "Phyzelaphryninae_ott63339" [460] "Eleutherodactylidae_ott63340" [461] "Craugastor_ott1091841" [462] "Haddadus_ott45657" [463] "Craugastorinae_ott7069989" [464] "Ceuthomantis_ott411155" [465] "Ceuthomantinae_ott277741" [466] "Noblella_ott580143" [467] "Euparkerella_ott387681" [468] "Bryophryne_ott45674" [469] "Microkayla_ott7070002" [470] "Barycholos_ott442099" [471] "Psychrophrynella_ott682536" [472] "Holoaden_ott941607" [473] "Holoadeninae_ott446314" [474] "Craugastoridae_ott63341" [475] "Epipedobates_ott192968" [476] "Leucostethus_ott7070056" [477] "Ameerega_ott615037" [478] "Colostethus_ott840290" [479] "Silverstoneia_nubicola_ott638061" [480] "Silverstoneia_ott467431" [481] "Colostethinae_ott1096757" [482] "Andinobates_ott533200" [483] "Dendrobates_ott60809" [484] "Excidobates_ott169660" [485] "Phyllobates_ott266338" [486] "Ranitomeya_ott516331" [487] "Oophaga_ott271432" [488] "Minyobates_ott271434" [489] "Adelphobates_ott271436" [490] "Dendrobatinae_ott1096758" [491] "Hyloxalus_ott1096760" [492] "Hyloxalinae_ott1096759" [493] "Allobates_ott407145" [494] "Mannophryne_ott766335" [495] "Ectopoglossus_ott7070048" [496] "Aromobates_ott357382" [497] "Anomaloglossus_ott1059120" [498] "Rheobates_ott1059121" [499] "Prostherapis_ott4133407" [500] "Aromobatinae_ott1059126" [501] "Dendrobatidae_ott581837" [502] "Churamiti_ott104959" [503] "Didynamipus_ott152264" [504] "Incilius_ott284628" [505] "Ingerophrynus_ott284645" [506] "Amazophrynella_ott77765" [507] "Pelophryne_ott417709" [508] "Pedostibes_ott417714" [509] "Oreophrynella_ott317404" [510] "Blythophryne_ott5926045" [511] "Melanophryniscus_ott506359" [512] "Osornophryne_ott506361" [513] "Schismaderma_ott506368" [514] "Rentapia_ott7069968" [515] "Pseudobufo_ott3619739" [516] "Leptophryne_ott1000787" [517] "Nimbaphrynoides_ott618903" [518] "Rhinella_ott909159" [519] "Nectophryne_ott779708" [520] "Nectophrynoides_ott943451" [521] "Dendrophryniscus_ott943455" [522] "Bufoides_ott3619731" [523] "Strauchbufo_ott6158681" [524] "Sabahphrynus_ott4133471" [525] "'Werneria(genusinOpisthokonta" [526] "ott1039942'" [527] "Wolterstorffina_ott1039944" [528] "Vandijkophrynus_ott1058528" [529] "Phrynoidis_ott909163" [530] "Peltophryne_ott906146" [531] "Adenomus_ott206075" [532] "Ghatophryne_ott7069948" [533] "Altiphrynoides_ott3619745" [534] "Nannophryne_ott334613" [535] "Epidalea_ott334615" [536] "Anaxyrus_boreas_ott436373" [537] "Anaxyrus_americanus_ott889326" [538] "Anaxyrus_ott334620" [539] "Bufotes_pewzowi_ott1072351" [540] "Bufotes_boulengeri_ott312348" [541] "Bufotes_oblongus_ott501744" [542] "Bufotes_viridis_ott962317" [543] "Bufotes_ott334622" [544] "Stephopaedes_ott370320" [545] "Capensibufo_ott370330" [546] "Xanthophryne_ott534594" [547] "Sclerophrys_superciliaris_ott10751" [548] "Sclerophrys_ott284630" [549] "Barbarophryne_ott5800473" [550] "Parapelophryne_ott3619737" [551] "Frostius_ott776624" [552] "Mertensophryne_ott831481" [553] "Ansonia_ott884638" [554] "Atelopus_ott884664" [555] "Bufo_japonicus_ott889333" [556] "Bufo_gargarizans_ott279549" [557] "Bufo_ott187219" [558] "Sigalegalephrynus_ott7069984" [559] "Rhaebo_ott906145" [560] "Poyntonophrynus_ott334619" [561] "Crepidophryne_ott136609" [562] "Duttaphrynus_ott960164" [563] "Truebella_ott3619730" [564] "Metaphryniscus_ott3619751" [565] "Laurentophryne_ott3619734" [566] "Bufonidae_ott889358" [567] "Telmatobius_ott736944" [568] "Telmatobiinae_ott777187" [569] "Lepidobatrachus_ott414583" [570] "Ceratophrys_ott386111" [571] "Chacophrys_ott431943" [572] "Caudiverbera_ott1068325" [573] "Ceratophryinae_ott777188" [574] "Uberabatrachus_ott6158684" [575] "'Wawelia(genusinHolozoa" [576] "ott6158686'" [577] "Baurubatrachus_ott3620439" [578] "Ceratophryidae_ott1008932" [579] "Atelognathus_ott594313" [580] "Chaltenobatrachus_ott6158620" [581] "Batrachyla_ott636138" [582] "Batrachylidae_ott1008933" [583] "Hyloidea_ott535802" [584] "Conraua_ott532104" [585] "Petropedetes_ott780983" [586] "Hylarthroleptis_ott4133596" [587] "Petropedetidae_ott337155" [588] "Liurana_ott3620715" [589] "Liurananinae_ott5926192" [590] "Alcalus_ott5926145" [591] "Alcalinae_ott5926144" [592] "Cornufer_ott376748" [593] "Platymantis_ott376756" [594] "Ceratobatrachinae_ott5926147" [595] "Ceratobatrachidae_ott1081207" [596] "Micrixalus_ott1054404" [597] "Micrixalidae_ott1081209" [598] "Phylacomantis_ott155651" [599] "Vatomantis_ott155652" [600] "Duboimantis_ott155653" [601] "Laurentomantis_ott155654" [602] "Gephyromantis_subgenus_Gephyromantis_ott730430" [603] "Gephyromantis_ott65127" [604] "Guibemantis_subgenus_Guibemantis_ott189957" [605] "Pandanusicola_ott1087627" [606] "Guibemantis_ott65128" [607] "Blommersia_ott484428" [608] "Boehmantis_ott484429" [609] "Spinomantis_ott484431" [610] "Wakea_ott484449" [611] "bernhardi_group_ott189958" [612] "cowani_group_ott1087728" [613] "laevigata_group_ott189959" [614] "betsileo_group_ott189960" [615] "madagascariensis_group_ott189961" [616] "Mantella_ott38970" [617] "Ochthomantis_ott155642" [618] "Mantidactylus_subgenus_Mantidactylus_ott484430" [619] "Hylobatrachus_ott678996" [620] "Maitsomantis_ott678997" [621] "Brygoomantis_ott678998" [622] "Chonomantis_ott678999" [623] "Mantidactylus_ott283924" [624] "Tsingymantis_ott976861" [625] "Mantellinae_ott764198" [626] "Aglyptodactylus_ott858604" [627] "Laliostoma_ott1054409" [628] "Laliostominae_ott764199" [629] "Sahona_ott764195" [630] "Boophis_ulftunni_group_ott591709" [631] "Boophis_albipunctatus_group_ott764192" [632] "Boophis_albilabris_group_ott764193" [633] "Boophis_goudoti_group_ott764194" [634] "Boophis_luteus_group_ott291550" [635] "Boophis_microtympanum_group_ott291551" [636] "Boophis_majori_group_ott291552" [637] "Boophis_mandraka_group_ott291553" [638] "Boophis_rappiodes_group_ott291554" [639] "Boophis_no_rank_Boophis_ott764197" [640] "Boophis_ott750471" [641] "Boophinae_ott764200" [642] "Mantellidae_ott38969" [643] "Nyctibatrachus_ott579706" [644] "Lankanectes_ott1000557" [645] "Nyctibatrachidae_ott1081210" [646] "Ptychadena_ott799885" [647] "'Hildebrandtia(genusinOpisthokonta" [648] "ott805120'" [649] "Lanzarana_ott3618164" [650] "Ptychadenidae_ott1081211" [651] "Nidirana_ott7070883" [652] "Glandirana_ott407917" [653] "Meristogenys_ott447458" [654] "Pulchrana_ott5800479" [655] "Humerana_ott4133627" [656] "Sylvirana_ott5800480" [657] "Papurana_ott5800481" [658] "Abavorana_ott5800482" [659] "'Rugosa(genusinBilateria" [660] "ott5800477'" [661] "Hylarana_ott909265" [662] "Pelophylax_porosus_ott885925" [663] "Pelophylax_cf_ott7070897" [664] "'Pelophylaxsp.AP-2016ott5926238'" [665] "Pelophylax_ott915572" [666] "Sanguirana_ott939786" [667] "Amnirana_ott7070869" [668] "'Huia(genusinOpisthokonta" [669] "ott73241'" [670] "Amolops_ott594781" [671] "Sumaterana_ott7070942" [672] "Rana_temporaria_ott14718" [673] "Rana_macrocnemis_ott842743" [674] "Rana_arvalis_ott448372" [675] "Rana_aurora_ott771201" [676] "Rana_tagoi_ott887103" [677] "Rana_subgenus_Rana_ott6158879" [678] "Rana_sphenocephala_ott61437" [679] "Pantherana_ott390002" [680] "Trypheropsis_ott397283" [681] "Rana_clamitans_ott515378" [682] "Aquarana_ott457630" [683] "Zweifelia_ott517467" [684] "sp.RdS541ott514662'" [685] "Lithobates_ott194286" [686] "Rana_ott364550" [687] "Odorrana_ott440559" [688] "'Hydrophylax(genusinDeuterostomia" [689] "ott5800478'" [690] "Clinotarsus_ott196284" [691] "Indosylvirana_ott5800483" [692] "Staurois_ott491960" [693] "'Babina(genusinDeuterostomia" [694] "ott1075295'" [695] "Hemimantis_ott4133632" [696] "Pterorana_ott3618410" [697] "Phrynopsis_ott5336502" [698] "Montorana_ott4133633" [699] "Microdiscopus_ott4133623" [700] "ott5346643'" [701] "ott5336501'" [702] "Ranidae_ott364560" [703] "Sallywalkerana_ott7070960" [704] "Indirana_ott528405" [705] "Ranixalidae_ott403946" [706] "Frankixalus_ott5926244" [707] "Liuixalus_ott356004" [708] "Pseudophilautus_ott455940" [709] "Feihyla_palpebralis_ott905916" [710] "Feihyla_ott638687" [711] "Chiromantis_doriae_ott594714" [712] "Chiromantis_vittatus_ott389176" [713] "Chiromantis_ott750030" [714] "Philautus_ott858619" [715] "Gracixalus_ott940934" [716] "Kurixalus_ott1000416" [717] "Raorchestes_ott13294" [718] "Nyctixalus_ott140891" [719] "ott60920'" [720] "ott5820355'" [721] "'Rhacophorus(genusinDeuterostomia" [722] "ott174267'" [723] "Taruga_ott7071023" [724] "Beddomixalus_ott4133641" [725] "Mercurana_ott4133643" [726] "Nasutixalus_ott5926252" [727] "Theloderma_asperum_ott594756" [728] "Theloderma_ott899254" [729] "Polypedates_megacephalus_ott908329" [730] "Polypedates_leucomystax_species_complex_ott1016237" [731] "Polypedates_ott908335" [732] "Ghatixalus_ott715952" [733] "Rhacophorinae_ott223221" [734] "Buergeria_ott175633" [735] "Buergeriinae_ott223222" [736] "Indorana_ott7666775" [737] "Rhacophoridae_ott432783" [738] "Phrynobatrachus_calcaratus_species_complex_ott909610" [739] "Phrynobatrachus_natalensis_species_complex_ott128002" [740] "Phrynobatrachus_mababiensis_species_complex_ott255122" [741] "Phrynobatrachus_ott406527" [742] "Phrynobatrachidae_ott504589" [743] "Arthroleptella_ott274121" [744] "Strongylopus_ott41644" [745] "Poyntonia_ott475120" [746] "Anhydrophryne_ott113819" [747] "Cacosternum_nanum_ott676305" [748] "Cacosternum_ott155686" [749] "Tomopterna_ott376752" [750] "Microbatrachella_ott751405" [751] "Nothophryne_ott3618085" [752] "Ericabatrachus_ott3618087" [753] "Natalobatrachus_ott532110" [754] "Amietia_ott1093295" [755] "Cacosterninae_ott896265" [756] "Pyxicephalus_ott911281" [757] "Aubria_ott143511" [758] "Pyxicephalinae_ott98460" [759] "Pyxicephalidae_ott504591" [760] "Odontobatrachus_ott5541336" [761] "Odontobatrachidae_ott5536254" [762] "Occidozyga_ott841800" [763] "Ingerana_ott998828" [764] "Occidozyginae_ott98462" [765] "'Sphaerotheca(genusinHolozoa" [766] "ott340050'" [767] "Feirana_ott391260" [768] "Nanorana_ott88189" [769] "Chrysopaa_ott4133659" [770] "Limnonectes_kuhlii_species_complex_ott307539" [771] "Limnonectes_ott646946" [772] "Quasipaa_ott859097" [773] "Nannophrys_ott775806" [774] "Hoplobatrachus_ott214642" [775] "Euphlyctis_ott376757" [776] "Minervarya_ott7070717" [777] "Fejervarya_ott914765" [778] "Dicroglossinae_ott98463" [779] "Allopaa_ott4133656" [780] "Ombrana_ott4133654" [781] "Dicroglossidae_ott1081208" [782] "'Ranoidea(superfamilyinsuborderNeobatrachia" [783] "ott911276'" [784] "Spicospina_ott1039925" [785] "Uperoleia_ott940195" [786] "Crinia_ott414587" [787] "Pseudophryne_ott127182" [788] "Metacrinia_ott412471" [789] "Myobatrachus_ott919139" [790] "'Assa(genusinOpisthokonta" [791] "ott906692'" [792] "Geocrinia_ott21505" [793] "Paracrinia_ott989413" [794] "Arenophryne_ott442097" [795] "Taudactylus_ott1080055" [796] "Myobatrachinae_ott214195" [797] "Adelotus_ott276281" [798] "Megistolotis_ott276283" [799] "Heleioporus_ott412467" [800] "Mixophyes_ott1073180" [801] "Lechriodus_ott160126" [802] "Philoria_ott214194" [803] "Limnodynastes_dumerilii_ott799654" [804] "ott3620442'" [805] "Limnodynastes_ott336756" [806] "Notaden_ott660957" [807] "Neobatrachus_ott1086229" [808] "Limnodynastinae_ott737864" [809] "ott5336498'" [810] "Bryobatrachus_ott3620469" [811] "Myobatrachidae_ott940181" [812] "Telmatobufo_ott736941" [813] "Calyptocephallela_ott346416" [814] "Calyptocephalellidae_ott346415" [815] "Myobatrachoidea_ott408493" [816] "Nasikabatrachus_ott919154" [817] "Nasikabatrachidae_ott542087" [818] "Sechellophryne_ott81795" [819] "Sooglossus_ott462993" [820] "Sooglossidae_ott882346" [821] "Sooglossoidea_ott408494" [822] "Semnodactylus_ott62328" [823] "Morerella_ott85260" [824] "Cryptothylax_ott186193" [825] "Kassina_ott535794" [826] "Opisthothylax_ott645881" [827] "Afrixalus_paradorsalis_ott362841" [828] "Afrixalus_ott652142" [829] "'Tachycnemis(genusinDeuterostomia" [830] "ott750024'" [831] "Hyperolius_concolor_ott505134" [832] "Hyperolius_fusciventris_ott85268" [833] "Hyperolius_viridiflavus_ott652134" [834] "Hyperolius_nasutus_complex_ott1088069" [835] "Hyperolius_ocellatus_ott40418" [836] "Hyperolius_marmoratus_ott441372" [837] "Hyperolius_balfouri_ott3619048" [838] "Hyperolius_parallelus_ott3619054" [839] "Hyperolius_tuberculatus_complex_ott914494" [840] "Hyperolius_ott78177" [841] "Alexteroon_ott1018592" [842] "Phlyctimantis_ott462985" [843] "Acanthixalus_ott532108" [844] "Heterixalus_ott652126" [845] "Paracassina_ott3619071" [846] "Arlequinus_ott3619083" [847] "Chlorolius_ott3619081" [848] "Callixalus_ott3619073" [849] "Chrysobatrachus_ott3619077" [850] "Kassinula_ott3619075" [851] "Rappia_ott7666450" [852] "Tornierella_ott4133669" [853] "Pseudocassina_ott4133668" [854] "Hyperoliidae_ott535796" [855] "Hemisus_ott968536" [856] "Hemisotidae_ott165721" [857] "Spelaeophryne_ott660153" [858] "Breviceps_adspersus_ott3618690" [859] "Breviceps_ott811566" [860] "Probreviceps_macrodactylus_ott111206" [861] "Probreviceps_ott283931" [862] "Balebreviceps_ott348136" [863] "Callulina_ott51821" [864] "Brevicipitidae_ott790993" [865] "Otophryne_ott354857" [866] "Otophryninae_ott404351" [867] "Elachistocleis_ott186172" [868] "Dermatonotus_ott186184" [869] "Hypopachus_ott354846" [870] "Dasypops_ott513414" [871] "Relictivomer_ott190096" [872] "Myersiella_ott593737" [873] "Syncope_ott833322" [874] "Arcovomer_ott844415" [875] "Gastrophryne_olivacea_ott565409" [876] "Gastrophryne_ott1062221" [877] "Ctenophryne_ott21518" [878] "Hamptophryne_ott304796" [879] "Stereocyclops_ott258756" [880] "Chiasmocleis_ott930341" [881] "Gastrophryninae_ott404352" [882] "Mysticellus_ott7070618" [883] "'Phrynella(genusinOpisthokonta" [884] "ott401609'" [885] "Microhyla_ott1054402" [886] "Metaphrynella_ott127416" [887] "Uperodon_ott127425" [888] "Micryletta_ott304793" [889] "Ramanella_ott237282" [890] "Kaloula_conjuncta_ott492217" [891] "Kaloula_ott563549" [892] "Glyphoglossus_ott728826" [893] "Chaperina_ott1080078" [894] "Microhylinae_ott630299" [895] "Phrynomantis_ott828944" [896] "Phrynomerinae_ott630304" [897] "Adelastes_ott3618939" [898] "Adelastinae_ott5800508" [899] "Hoplophryne_ott111196" [900] "Melanobatrachus_ott701612" [901] "Melanobatrachinae_ott685276" [902] "Albericus_ott114125" [903] "Oxydactyla_ott635875" [904] "Austrochaperina_ott635878" [905] "Cophixalus_ott725335" [906] "Sphenophryne_ott918197" [907] "Aphantophryne_ott1018584" [908] "Liophryne_ott1039945" [909] "Genyophryne_ott21522" [910] "Copiula_ott442618" [911] "Oreophryne_ott968531" [912] "Choerophryne_ott594327" [913] "Genyophryninae_ott790988" [914] "Scaphiophryne_ott283929" [915] "Paradoxophyla_ott1091642" [916] "Scaphiophryninae_ott790989" [917] "Anodonthyla_ott352317" [918] "Rhombophryne_ott443908" [919] "Cophyla_ott474124" [920] "Stumpffia_ott538044" [921] "Anilany_ott5926118" [922] "Madecassophryne_ott3618941" [923] "Platypelis_ott828937" [924] "Plethodontohyla_ott828948" [925] "Cophylinae_ott790990" [926] "Dyscophus_ott155674" [927] "Calluella_ott442106" [928] "Dyscophinae_ott790991" [929] "Hylophorbus_ott178305" [930] "Gastrophrynoides_ott401602" [931] "Xenorhina_ott635867" [932] "Vietnamophryne_ott7070471" [933] "Pherohapsis_ott27649" [934] "Paedophryne_ott27667" [935] "Pseudocallulops_ott266512" [936] "Metamagnusia_ott266513" [937] "Barygenys_ott343024" [938] "Siamophryne_ott7070469" [939] "Callulops_ott442619" [940] "Mantophryne_ott562905" [941] "Oninia_ott789802" [942] "Asterophrys_ott930335" [943] "Asterophryinae_ott790992" [944] "Kalophrynus_ott595012" [945] "Kalophrynidae_ott977735" [946] "Melanophryne_ott484356" [947] "Synapturanus_ott1039919" [948] "Caluella_ott7666463" [949] "Parhoplophryne_ott3618937" [950] "Phrynocara_ott4133706" [951] "ott5336500'" [952] "Microhylidae_ott1062202" [953] "Scotobleps_ott406460" [954] "Nyctibates_ott475155" [955] "Leptodactylodon_ott487657" [956] "Astylosternus_ott502427" [957] "Leptopelis_ott750017" [958] "Cardioglossa_ott1028305" [959] "Trichobatrachus_ott780979" [960] "Arthroleptis_poecilonotus_ott257572" [961] "sp.ott968549'" [962] "Arthroleptis_ott968551" [963] "Pararthroleptis_ott4133674" [964] "Arthroleptidae_ott968547" [965] "Microhyloidea_ott1062201" [966] "Neobatrachia_ott535804" [967] "Leiopelma_ott611959" [968] "Vieraella_ott3620429" [969] "Leiopelmatidae_ott611960" [970] "Ascaphus_ott485832" [971] "Ascaphidae_ott1013114" [972] "Pelodytes_ott509553" [973] "Aerugoamnis_ott7666850" [974] "Tephrodytes_ott4132928" [975] "Miopelodytes_ott4132929" [976] "Pelodytidae_ott509554" [977] "Xenophrys_ott525145" [978] "Leptobrachium_liui_ott125247" [979] "Leptobrachium_ott828157" [980] "ott5800427'" [981] "ott5800430'" [982] "ott5800433'" [983] "ott5800425'" [984] "ott5800432'" [985] "ott5800431'" [986] "Leptolalax_ott828161" [987] "Brachytarsophrys_ott1026957" [988] "Leptobrachella_ott3618031" [989] "Oreolalax_ott125264" [990] "Megophrys_ott626504" [991] "Vibrissaphora_ott535112" [992] "'Scutiger(genusinHolozoa" [993] "ott542861'" [994] "Atympanophrys_ott542885" [995] "Ophryophryne_ott854980" [996] "Leptobatrachium_ott7666821" [997] "Megophryidae_ott828160" [998] "Pelobates_syriacus_ott1026962" [999] "Pelobates_fuscus_ott233459" [1000] "Pelobates_balcanicus_ott7071200" [1001] "Pelobates_ott703766" [1002] "Spea_ott1013103" [1003] "Scaphiopus_ott485826" [1004] "Prospea_ott6158980" [1005] "Elkobatrachus_ott6158976" [1006] "Macropelobates_ott4132922" [1007] "Eopelobates_ott4132923" [1008] "Pelobatidae_ott485821" [1009] "Pelobatoidea_ott485820" [1010] "Barbourula_ott95655" [1011] "Bombina_variegata_ott991539" [1012] "Bombina_ott991561" [1013] "Eobarbourula_ott7665789" [1014] "Bombinatoridae_ott1013112" [1015] "Alytes_obstetricans_ott118036" [1016] "Alytes_ott118035" [1017] "Alytinae_ott5334814" [1018] "Latonia_ott4948216" [1019] "Discoglossus_galganoi_ott461369" [1020] "Discoglossus_pictus_ott465082" [1021] "Discoglossus_ott465081" [1022] "Discoglossinae_ott5334815" [1023] "Bakonybatrachus_ott6158557" [1024] "Zaphrissa_ott4133723" [1025] "Saevesoederberghia_ott4133718" [1026] "Scotiophryne_ott4133710" [1027] "Procerobatrachus_ott4133722" [1028] "Prodiscoglossus_ott4133715" [1029] "Enneabatrachus_ott4133713" [1030] "Paradiscoglossus_ott4133707" [1031] "Estesina_ott4133709" [1032] "Paralatonia_ott3620479" [1033] "Aralobatrachus_ott3620756" [1034] "Kizylkuma_ott3621137" [1035] "Eodiscoglossus_ott3620474" [1036] "ott5334816'" [1037] "Alytidae_ott991545" [1038] "Rhinophrynus_ott459015" [1039] "Rhadinosteus_ott4133726" [1040] "Chelomophrynus_ott4133728" [1041] "Eorhinophrynus_ott4133724" [1042] "Rhinophrynidae_ott459016" [1043] "Hymenochirus_ott940172" [1044] "Pseudhymenochirus_ott140873" [1045] "Pipa_ott233481" [1046] "Pipinae_ott436357" [1047] "sp.BOLD:AAH0940ott37892'" [1048] "Silurana_ott940175" [1049] "Xenopus_laevis_ott465096" [1050] "Xenopus_subgenus_Xenopus_ott1000363" [1051] "'Xenopus(genusinDeuterostomia" [1052] "ott465090'" [1053] "Xenopodinae_ott940173" [1054] "Kuruleufenia_ott7666858" [1055] "Shomronella_ott4133741" [1056] "Oumtkoutia_ott4133743" [1057] "Saltenia_ott4133745" [1058] "Eoxenopoides_ott4133746" [1059] "Llankibatrachus_ott3617963" [1060] "Pachycentrata_ott3617959" [1061] "Shelania_ott4948223" [1062] "Pipidae_ott465087" [1063] "Cordicephalus_ott4948379" [1064] "Pipoidea_ott1013102" [1065] "Iberobatrachus_ott6158601" [1066] "Eurycephalella_ott6158580" [1067] "Cratia_ott6158577" [1068] "Gracilibatrachus_ott6158593" [1069] "Hungarobatrachus_ott6158599" [1070] "Avitabatrachus_ott3620464" [1071] "Prosalirus_ott3620489" [1072] "Thoraciliacus_ott3620434" [1073] "Aygroua_ott3620490" [1074] "Sunnybatrachus_ott3620477" [1075] "Estesiella_ott3620480" [1076] "Neusibatrachus_ott4133754" [1077] "Albionbatrachus_ott4133752" [1078] "Palaeobatrachus_ott3620432" [1079] "Palaeobatrachidae_ott3620433" [1080] "Gobiatoides_ott4133749" [1081] "Cretasalia_ott4133747" [1082] "Gobiates_ott4948381" [1083] "Gobiatidae_ott3620484" [1084] "Nezpercius_ott3620485" [1085] "'Ranoidea(genusinfamilyPelodryadidae" [1086] "ott7666856'" [1087] "Pelodryadidae_ott3620482" [1088] "Liaobatrachus_ott3620450" [1089] "Comobatrachus_ott3620457" [1090] "Theatonius_ott4133750" [1091] "Tregobatrachidae_ott3620458" [1092] "Hatzegobatrachus_ott3620471" [1093] "Vulcanobatrachus_ott3620454" [1094] "Beelzebufo_ott3620436" [1095] "Czatkobatrachus_ott3620448" [1096] "Anura_ott991547" [1097] "Batrachia_ott471197" [1098] "Altenglanerpeton_ott6137829" [1099] "Warrenisuchus_ott6376283" [1100] "Kirktonecta_ott6372803" [1101] "Oestocephalus_ott3620786" [1102] "Oestocephalidae_ott6373116" [1103] "Amphibiopodiscus_ott6137950" [1104] "Glanochthon_ott6372584" [1105] "Antarctosuchus_ott6137976" [1106] "Proxilodon_ott7667189" [1107] "Temnocorpichnus_ott7667208" [1108] "Huskerpeton_ott7667122" [1109] "Arachana_ott7665764" [1110] "Hyloplesion_ott4948565" [1111] "Orthocosta_ott5332417" [1112] "Seeleya_ott4948566" [1113] "Microbrachis_ott4948567" [1114] "Microbrachidae_ott4948564" [1115] "Palaeoherpeton_ott4948575" [1116] "Pteroplax_ott4948569" [1117] "Calligenethlon_ott4948574" [1118] "Pholiderpeton_ott4948576" [1119] "Leptophractus_ott4948570" [1120] "Nummulosaurus_ott3621136" [1121] "Aversor_ott3620936" [1122] "Eogyrinidae_ott4948568" [1123] "'Archeria(genusinOpisthokonta" [1124] "ott4948498'" [1125] "Cricotus_ott4948503" [1126] "Neopteroplax_ott4948500" [1127] "Archeriidae_ott4948497" [1128] "Anthracosaurus_ott4948495" [1129] "Eobaphetes_ott3620825" [1130] "Anthracosauridae_ott4948494" [1131] "Limnodytes_ott7667134" [1132] "Cyclotosaurus_ott4948420" [1133] "Capitosauroides_ott4948417" [1134] "Paracyclotosaurus_ott4948414" [1135] "ott5332412'" [1136] "Capitosauridae_ott4948413" [1137] "Osteophorus_ott5332413" [1138] "Eryops_ott4948428" [1139] "Actinodon_ott4948432" [1140] "Clamorosaurus_ott4948431" [1141] "Onchiodon_ott4948433" [1142] "Glaukerpeton_ott3621251" [1143] "Eryopidae_ott4948427" [1144] "'Plagiosaurus(genusinDeuterostomia" [1145] "ott3396668'" [1146] "Melanopelta_ott5332407" [1147] "Plagiosternum_ott4948437" [1148] "Gerrothorax_ott4948439" [1149] "Plagiobatrachus_ott4948438" [1150] "Plagiorophus_ott4948436" [1151] "Plagiosuchus_ott4948440" [1152] "Plagioscutum_ott3620942" [1153] "Aranetsia_ott3620938" [1154] "Plagiosauridae_ott4948435" [1155] "Hyperokynodon_ott6159417" [1156] "Tirraturhinus_ott6159427" [1157] "Trematosaurus_ott4948448" [1158] "Trematolestes_ott6159429" [1159] "Inflectosaurus_ott4948445" [1160] "Cosgriffius_ott3621074" [1161] "Microposaurus_ott4948451" [1162] "Aphaneramma_ott4948452" [1163] "Trematosuchus_ott4948455" [1164] "Platystega_ott4948456" [1165] "Erythrobatrachus_ott4948457" [1166] "Tertremoides_ott4948447" [1167] "Tertrema_ott4948446" [1168] "Stoschiosaurus_ott4948442" [1169] "Bukobaja_ott3620689" [1170] "Wantzosaurus_ott4948443" [1171] "Trematosauridae_ott4948441" [1172] "Derwentia_ott5332402" [1173] "Pneumatostega_ott4948591" [1174] "Trucheosaurus_ott4948590" [1175] "Laidleria_ott4948595" [1176] "Deltasaurus_ott4948594" [1177] "Rhytidosteus_ott4948593" [1178] "Peltostega_ott4948592" [1179] "Boreopelta_ott4948589" [1180] "Nanolania_ott3620978" [1181] "Sangaia_ott6159395" [1182] "Rhytidosteidae_ott4948586" [1183] "Pasawioops_ott6158525" [1184] "Rubeostratilia_ott6158529" [1185] "Gerobatrachus_ott6158519" [1186] "'Micropholis(genusinOpisthokonta" [1187] "ott5332409'" [1188] "Plemmyradytes_ott4948600" [1189] "Eoscopus_ott4948602" [1190] "Platyrhinops_ott4948601" [1191] "Amphibamus_ott4948603" [1192] "Georgenthalia_ott4948604" [1193] "Micromelerpeton_ott4948599" [1194] "Doleserpeton_ott4948597" [1195] "Tersomius_ott4948606" [1196] "Amphibamidae_ott4948596" [1197] "Platycepsion_ott6159073" [1198] "Banksiops_ott4948623" [1199] "Sinobrachyops_ott4948622" [1200] "Gobiops_ott3621200" [1201] "Bathignathus_ott3620690" [1202] "Vigilius_ott3621075" [1203] "Bothriceps_ott4948611" [1204] "Xenobrachyops_ott4948614" [1205] "Brachyops_ott4948617" [1206] "Batrachosuchus_ott4948618" [1207] "Hadrokkosaurus_ott4948616" [1208] "Vanastega_ott3620909" [1209] "Notobrachyops_ott4948621" [1210] "Brachyopidae_ott4948609" [1211] "Adamanterpeton_ott4948584" [1212] "Chenoprosopus_ott4948581" [1213] "Macrerpeton_ott4948580" [1214] "Cochleosaurus_ott4948579" [1215] "Procochleosaurus_ott4948578" [1216] "Nigerpeton_ott4145928" [1217] "Cochleosauridae_ott4948577" [1218] "Callistomordax_ott6138163" [1219] "Dutuitosaurus_ott7667152" [1220] "Metoposaurus_ott7667153" [1221] "Calamops_ott4948542" [1222] "Koskinonodon_ott3621174" [1223] "Apachesaurus_ott4948546" [1224] "ott4948553'" [1225] "Metoposauridae_ott4948540" [1226] "Broomistega_ott3621325" [1227] "Rhinesuchoides_ott4948557" [1228] "Rhinesuchus_ott4948562" [1229] "Australerpeton_ott4948561" [1230] "Uranocentrodon_ott4948563" [1231] "Laccosaurus_ott3620886" [1232] "Rhineceps_ott4948560" [1233] "Rhinesuchidae_ott4948555" [1234] "Trimerorhachis_ott4948628" [1235] "Dawsonerpeton_ott4948631" [1236] "Doragnathus_ott4948632" [1237] "Neldasaurus_ott4948633" [1238] "Lafonius_ott4948627" [1239] "ott5332408'" [1240] "Trimerorhachidae_ott4948624" [1241] "Koinia_ott3621294" [1242] "Uralosuchus_ott3621295" [1243] "Archegosaurus_ott4948521" [1244] "Tryphosuchus_ott4948529" [1245] "Collidosuchus_ott4948531" [1246] "Bageherpeton_ott4948532" [1247] "Bashkirosaurus_ott4948533" [1248] "Prionosuchus_ott4948526" [1249] "Konzhukovia_ott4948527" [1250] "Platyoposaurus_ott4948534" [1251] "Kashmirosaurus_ott3621235" [1252] "ott5326030'" [1253] "Archegosauridae_ott4948520" [1254] "Milnererpeton_ott3621379" [1255] "Schoenfelderpeton_ott4948489" [1256] "Branchiosaurus_ott4948490" [1257] "Leptorophus_ott3620998" [1258] "Tungussogyrinus_ott3621023" [1259] "Apateon_ott6148513" [1260] "Branchiosauridae_ott4948488" [1261] "Scapanops_ott6159192" [1262] "Aspidosaurus_ott5332410" [1263] "Zygosaurus_ott4948464" [1264] "Platyhystrix_ott4948462" [1265] "Brevidorsum_ott4948461" [1266] "Anakamacops_ott4948477" [1267] "Iratusaurus_ott4948459" [1268] "Dissorophus_ott4948465" [1269] "Eumicrerpeton_ott4948479" [1270] "Astreptorhachis_ott4948476" [1271] "Alegeinosaurus_ott4948475" [1272] "Broiliellus_ott4948471" [1273] "Conjunctio_ott4948470" [1274] "Kamacops_ott4948469" [1275] "Mazonerpeton_ott4948468" [1276] "Cacops_ott4948466" [1277] "Fayella_ott3621071" [1278] "Perryella_ott3620971" [1279] "Reiszerpeton_ott7667056" [1280] "Dissorophidae_ott4948458" [1281] "Nyranerpeton_ott7667163" [1282] "Eimerisaurus_ott4948483" [1283] "Branchierpeton_ott4948481" [1284] "Limnerpeton_ott4948484" [1285] "Limnerpeton_elegans_ott6159339" [1286] "Limnogyrinus_ott3620986" [1287] "Micromelerpetontidae_ott4948480" [1288] "Odenwaldia_ott4948408" [1289] "Thoosuchus_ott4948409" [1290] "Volgosuchus_ott4948410" [1291] "Benthosuchidae_ott4948405" [1292] "'Ranula(genusinDeuterostomia" [1293] "ott7667193'" [1294] "Seymouria_ott4948517" [1295] "Rhinosauriscus_ott4948512" [1296] "ott5332401'" [1297] "Seymouriidae_ott4948510" [1298] "Stegotretus_ott6375811" [1299] "Cardiocephalus_ott4948394" [1300] "Bolterpeton_ott3621080" [1301] "Elfridia_ott4948390" [1302] "Cymatorhiza_ott4948391" [1303] "Hylerpeton_ott4948393" [1304] "Pariotichus_ott4948399" [1305] "Leiocephalikon_ott4948397" [1306] "Euryodus_ott4948402" [1307] "Sparodus_ott4948404" [1308] "ott4948388'" [1309] "Gymnarthridae_ott4948387" [1310] "Tarsopterus_ott7667205" [1311] "Goniocephalus_ott6159217" [1312] "Palaeotriton_ott6159353" [1313] "Sillerpeton_ott3621204" [1314] "Phlegethontia_ott4948386" [1315] "ott5332415'" [1316] "Phlegethontiidae_ott4948385" [1317] "Ophiderpeton_ott5325979" [1318] "Coloraderpeton_ott4948384" [1319] "Ophiderpetontidae_ott4948383" [1320] "Luzocephalus_ott3620880" [1321] "Thenaropus_ott3620729" [1322] "Gnorhimosuchus_ott3620882" [1323] "Silvanerpeton_ott3620720" [1324] "Puertollanopus_ott4141858" [1325] "Pariostegus_ott3621359" [1326] "Allopus_ott3620919" [1327] "Iberospondylus_ott3621151" [1328] "Dendrerpeton_ott4133863" [1329] "Balanerpeton_ott3621046" [1330] "Eugyrinus_ott4133866" [1331] "Dendrysekos_ott3620759" [1332] "Dendrerpetontidae_ott3621047" [1333] "Slaugenhopia_ott3621279" [1334] "Tupilakosaurus_ott3621032" [1335] "Thabanchuia_ott3620977" [1336] "Batrachosuchoides_ott3621069" [1337] "Tupilakosauridae_ott3621033" [1338] "Eolydekkerina_ott3621374" [1339] "Edingerella_ott3621372" [1340] "Rewana_ott4133848" [1341] "Mahavisaurus_ott4133849" [1342] "Indobrachyops_ott4133850" [1343] "Indobrachyopidae_ott3620699" [1344] "Kuttycephalus_ott3621377" [1345] "Compsocerops_ott3621373" [1346] "Siderops_ott4133916" [1347] "Koolasuchus_ott4133914" [1348] "Pelorocephalus_ott4133913" [1349] "Keratobrachyops_ott3620693" [1350] "Chigutisauridae_ott3621378" [1351] "Deltaherpeton_ott6159127" [1352] "Greererpeton_ott3620905" [1353] "Colosteus_ott4133851" [1354] "Ichthyerpeton_ott3620724" [1355] "Colosteidae_ott3620902" [1356] "Quasicyclotosaurus_ott3620903" [1357] "Dvinosaurus_ott4133890" [1358] "Dvinosauridae_ott3621292" [1359] "Kourerpeton_ott4133893" [1360] "Kourerpetidae_ott3621296" [1361] "Parioxys_ott4133895" [1362] "Parioxyidae_ott3621297" [1363] "Melosaurus_ott4133889" [1364] "Melosauridae_ott3621077" [1365] "Rileymillerus_ott3621029" [1366] "Palatinerpeton_ott3621076" [1367] "Edops_ott4133888" [1368] "Edopidae_ott3621073" [1369] "Stenotosaurus_ott6159317" [1370] "Cherninia_ott3621376" [1371] "Jammerbergia_ott3620885" [1372] "Bulgosuchus_ott3621260" [1373] "Tatrasuchus_ott3621259" [1374] "Wetlugasaurus_ott4133840" [1375] "Wellesaurus_ott4133839" [1376] "Mastodonsaurus_ott3620723" [1377] "Archotosaurus_ott4133843" [1378] "Promastodonsaurus_ott4133845" [1379] "Eocyclotosaurus_ott4133846" [1380] "Kestrosaurus_ott4133847" [1381] "Xenotosuchus_ott3621222" [1382] "Komatosuchus_ott3621276" [1383] "Subcyclotosaurus_ott3620937" [1384] "Mastodonsauridae_ott3620685" [1385] "Rotaurisaurus_ott3620911" [1386] "Almasaurus_ott3620969" [1387] "Almasauridae_ott3620910" [1388] "Manubrantlia_ott3620907" [1389] "Otocratiidae_ott3621202" [1390] "Yarengiidae_ott3621318" [1391] "Yuanansuchus_ott4133911" [1392] "Heylerosauridae_ott3621317" [1393] "Tambachia_ott3621236" [1394] "Ecolsonia_ott4133912" [1395] "Mordex_ott3621361" [1396] "Phonerpeton_ott3621065" [1397] "Trematopsidae_ott3621321" [1398] "Fedexia_ott7667214" [1399] "Rotaryus_ott6159408" [1400] "Anconastes_ott4133792" [1401] "Acheloma_ott4133794" [1402] "Actiobates_ott4133791" [1403] "Trematopidae_ott3621234" [1404] "Isodectes_ott3621316" [1405] "Acroplous_ott4133873" [1406] "Erpetosaurus_ott4133872" [1407] "Eobrachyopidae_ott3620988" [1408] "Peltobatrachus_ott3621182" [1409] "Peltobatrachidae_ott3620962" [1410] "Intasuchus_ott4133902" [1411] "Syndyodosuchus_ott4133904" [1412] "Intasuchidae_ott3621040" [1413] "Sclerothorax_ott3620706" [1414] "Sclerothoracidae_ott3620707" [1415] "Moenkopisaurus_ott3620979" [1416] "Lydekkerina_ott3621100" [1417] "Deltacephalus_ott4133762" [1418] "Chomatobatrachus_ott4133764" [1419] "Lydekkerinidae_ott3620946" [1420] "Abiadisaurus_ott3620849" [1421] "Megalocephalus_ott3621381" [1422] "Kyrinion_ott3621293" [1423] "Baphetes_ott3620847" [1424] "Eucritta_ott3620850" [1425] "Loxomma_ott4133853" [1426] "Metaxygnathus_ott3621223" [1427] "Ventastega_ott3621221" [1428] "Baphetidae_ott3620848" [1429] "Caerorhachis_ott4133782" [1430] "Caerorhachidae_ott3621220" [1431] "Zatrachys_ott3620883" [1432] "Stegops_ott4133906" [1433] "Dasyceps_ott4133781" [1434] "Zatrachydidae_ott3621022" [1435] "Eoserpeton_ott3620854" [1436] "Limnopus_ott3620855" [1437] "Erpetobrachium_ott3620862" [1438] "Bradymedusa_ott3620866" [1439] "Erierpeton_ott3620863" [1440] "Cursipes_ott3620809" [1441] "Thinopus_ott3620801" [1442] "Ammobatrachus_ott3621263" [1443] "Adelospondylus_ott4133887" [1444] "Adelogyrinus_ott4133886" [1445] "Dolichopareias_ott4133885" [1446] "Palaeomolgophis_ott3621280" [1447] "Adelogyrinidae_ott3621262" [1448] "Silvadectes_ott7667035" [1449] "Oradectes_ott7667034" [1450] "Orobates_ott6159155" [1451] "Ambedus_ott4133825" [1452] "Phanerosaurus_ott4133824" [1453] "Stephanospondylus_ott4133823" [1454] "Diadectes_ott4133816" [1455] "Diadectidae_ott3621190" [1456] "Syphonodon_ott3621101" [1457] "Lysipterygium_ott3621049" [1458] "Pseudophlegethontia_ott4133854" [1459] "Pseudophlegethontiidae_ott3620959" [1460] "Lethiscus_ott4133856" [1461] "Lethiscidae_ott3620960" [1462] "Barillopus_ott3620989" [1463] "Eosaurus_ott3620995" [1464] "Iliodiscus_ott3620791" [1465] "Itemirella_ott3620746" [1466] "Pseudobradypus_ott3620744" [1467] "Matthewichnus_ott3620871" [1468] "Nectes_ott3620821" [1469] "Metaeus_ott3620700" [1470] "Hylopus_ott3620820" [1471] "Octopodichnus_ott3621170" [1472] "Eldeceeon_ott3621036" [1473] "Bruktererpeton_ott4133901" [1474] "Eusauropleura_ott4133899" [1475] "Gephyrostegus_ott4133896" [1476] "Gephyrostegidae_ott3621038" [1477] "Eoherpeton_ott4133775" [1478] "Eoherpetontidae_ott3621161" [1479] "Waggoneria_ott4133776" [1480] "Waggoneriidae_ott3621160" [1481] "Tseajaia_ott4133766" [1482] "Tseajaiidae_ott3621159" [1483] "Madygenerpeton_ott6159117" [1484] "Jarilinus_ott3621035" [1485] "Chroniosaurus_ott4133768" [1486] "Phratochronis_ott4133773" [1487] "Uralerpeton_ott4133769" [1488] "Suchonica_ott3620846" [1489] "Chroniosuchus_ott3620802" [1490] "Chroniosuchidae_ott3620803" [1491] "Timanosaurus_ott3620844" [1492] "Mauchchunkia_ott4133808" [1493] "Papposaurus_ott4133807" [1494] "Proterogyrinus_ott4133805" [1495] "Proterogyrinidae_ott3620841" [1496] "Solenodonsaurus_bohemicus_ott7667200" [1497] "Solenodonsaurus_ott4133803" [1498] "Solenodonsauridae_ott3620845" [1499] "Tokosauridae_ott3621320" [1500] "Jiyuanitectum_ott6159094" [1501] "Bystrowiella_ott6159090" [1502] "Yumenerpeton_ott7667022" [1503] "Dromotectum_ott3620985" [1504] "Axitectum_ott4133785" [1505] "Synesuchus_ott3620717" [1506] "Vyushkoviana_ott7667020" [1507] "Bystrowianidae_ott3620767" [1508] "Tulerpeton_ott3621243" [1509] "Tulerpetontidae_ott3621242" [1510] "Pholidogaster_ott3620765" [1511] "Diplovertebron_ott3620963" [1512] "Pholidogasteridae_ott3620766" [1513] "Cricotillus_ott4133783" [1514] "Cricotidae_ott3620764" [1515] "Emeroleter_ott4133834" [1516] "Bashkyroleter_ott4133836" [1517] "Macroleter_ott4133831" [1518] "Nycteroleter_ott4133828" [1519] "Rhipaeosaurus_ott4128674" [1520] "Nycteroleteridae_ott3620741" [1521] "Crassigyrinus_ott3621209" [1522] "Crassigyrinidae_ott3621210" [1523] "Ymeria_ott6159265" [1524] "Ichthyostega_ott3620842" [1525] "Ichthyostegidae_ott3620843" [1526] "Hynerpeton_ott3621155" [1527] "Whatcheeria_ott3621156" [1528] "Ossinodus_ott3621274" [1529] "Pederpes_ott3621152" [1530] "Occidens_ott3621187" [1531] "Whatcheeriidae_ott3621153" [1532] "Utaherpeton_ott3621157" [1533] "Baropezia_ott3621158" [1534] "Tridentichnus_ott3621090" [1535] "Megapezia_ott3621096" [1536] "Westlothiana_ott3621363" [1537] "Saxonerpeton_ott4133755" [1538] "Hapsidopareion_ott4133756" [1539] "Llistrofus_ott4133758" [1540] "Hapsidopareiontidae_ott3621365" [1541] "Asaphestera_ott3621342" [1542] "Crinodon_ott4133882" [1543] "Tuditanus_ott4133883" [1544] "Boii_ott4133884" [1545] "Tuditanidae_ott3621044" [1546] "Quasicaecilia_ott3620876" [1547] "Batropetes_ott4133868" [1548] "Carrolla_ott4133870" [1549] "Brachystelechidae_ott3621082" [1550] "Odonterpeton_ott4133871" [1551] "Odonterpetontidae_ott3621079" [1552] "Pantylus_ott3621084" [1553] "Trachystegos_ott4133867" [1554] "Pantylidae_ott3621083" [1555] "Tambaroter_ott6159351" [1556] "Ostodolepis_ott4133799" [1557] "Micraroter_ott4133801" [1558] "Pelodosotis_ott4133797" [1559] "Nannaroter_ott3621350" [1560] "Ostodolepidae_ott3620772" [1561] "Trihecaton_ott4133796" [1562] "Trihecatontidae_ott3620771" [1563] "Rhynchonkos_ott4133918" [1564] "Rhynchonkidae_ott3621346" [1565] "Paramicrobrachis_ott3621347" [1566] "Bissektia_ott3620703" [1567] "Collettosaurus_ott3620711" [1568] "Anomoeichnus_ott3620710" [1569] "Paleohelcura_ott3620709" [1570] "Batrachichnus_ott3620708" [1571] "Novascoticus_ott3621059" [1572] "Mesichnium_ott3621055" [1573] "Notalacerta_ott3620889" [1574] "Glossoliga_ott3620895" [1575] "Notamphibia_ott3620982" [1576] "Batrachiderpeton_ott3620973" [1577] "Batrachiderpetontidae_ott3620972" [1578] "Montcellia_ott6159455" [1579] "Ctenerpeton_ott4133874" [1580] "Ptyonius_ott4133876" [1581] "Sauropleura_ott3621323" [1582] "Crossotelos_ott4133879" [1583] "Urocordylus_ott4133877" [1584] "Lepterpeton_ott4133878" [1585] "Urocordylidae_ott3620984" [1586] "Keraterpeton_ott3621322" [1587] "Diceratosaurus_ott4133907" [1588] "Diplocaulus_ott3620731" [1589] "Keraterpetontidae_ott3620732" [1590] "Ductilodon_ott3620975" [1591] "Diploceraspis_ott3620858" [1592] "Diplocaulidae_ott3621232" [1593] "Karpinskiosaurus_ott4133790" [1594] "Bystrowiana_ott4133788" [1595] "Kotlassia_ott3621230" [1596] "Kotlassiidae_ott3621231" [1597] "Spinarerpeton_ott6159180" [1598] "Makowskia_ott7667039" [1599] "Ariekanerpeton_ott4133858" [1600] "Utegenia_ott4133859" [1601] "Letoverpeton_ott4133860" [1602] "Discosauriscus_ott3621277" [1603] "Melanerpeton_ott4133857" [1604] "Discosauriscidae_ott3621042" [1605] "Datheosaurus_ott3620928" [1606] "Diplopelma_ott3620726" [1607] "Stanocephalosaurus_ott3621227" [1608] "Crucipes_ott3620798" [1609] "Adenoderma_ott3620770" [1610] "Marpurgichnium_ott3621309" [1611] "Hyloidichnus_ott3621312" [1612] "Ceratophryne_ott3621314" [1613] "Agostopus_ott3620834" [1614] "Palaeosauropus_ott3620828" [1615] "Acherontiscus_ott3621089" [1616] "Acherontiscidae_ott3621088" [1617] "Arizonerpeton_ott3621250" [1618] "Nanopus_ott3621031" [1619] "Capetus_ott3621255" [1620] "Asperipes_ott3620762" [1621] "Dromillopus_ott3621304" [1622] "Spathicephalus_ott3621330" [1623] "Dromopus_ott3621138" [1624] "Pleuroptyx_ott3621124" [1625] "Brachydectes_ott6159058" [1626] "Cocytinidae_ott3621140" [1627] "Lysorocephalus_ott3621311" [1628] "Lysorophus_ott3620916" [1629] "Molgophis_ott4133778" [1630] "Lysorophidae_ott3620917" [1631] "Pomatops_ott3621238" [1632] "Nanipes_ott3621240" [1633] "Ferganobatrachus_ott3621067" [1634] "Lapillopsis_ott3621072" [1635] "Crenipes_ott3621064" [1636] "Strictipes_ott3620941" [1637] "Foliipes_ott3620968" [1638] "Acerastea_ott3620970" [1639] "Devipes_ott3620965" [1640] "Biarmica_ott3620964" [1641] "Acanthostega_ott3620966" [1642] "Acanthostegidae_ott3620967" [1643] "Acutipes_ott3620939" [1644] "Barypodus_ott3621120" [1645] "Ichnium_ott7667127" [1646] "Erpetosuchus_ott6149016" [1647] "Discodactylus_ott5338047" [1648] "Amphibiopus_ott4141536" [1649] "Lehahichnus_ott4144213" [1650] "Saharastega_ott4145925" [1651] "Uruyiella_ott4145931" [1652] "Laidleriidae_ott4145930" [1653] "Ruecklinichnium_ott7667197" [1654] "Triadobatrachus_ott4948636" [1655] "Miobatrachus_ott4948635" [1656] "Protobatrachidae_ott4948634" [1657] "Proanura_ott5325992" [1658] "Eobatrachus_ott7667064" [1659] "Triassurus_ott6159433" [1660] "ott5326050'" [1661] "ott5736797'" [1662] "ott5326010'" [1663] "ott4948486'" [1664] "ott5332403'" [1665] "'Actinodontidae(familyinDeuterostomia" [1666] "ott4948485'" [1667] "Temnospondyli_ott5325987" [1668] "Amphibia_ott544595"edges <- datelife::extract_ott_ids(x=amphibia_taxonomy$edge_label)After extracting ott ids, there are some non numeric elements:'Caecilia(genusinDeuterostomia ott9110' 'Atylodes(genusinDeuterostomia ott693464' 'Stereochilus(genusinOpisthokonta ott798664' ott7666946' ott5336221' 'Proteus(genusindomainEukaryota ott666457' 'Ambystoma''unisexualhybridcomplex''ott203585' ott7071236' ott6159010' 'Liua(genusinHolozoa ott675465' 'Parrisia(genusinOpisthokonta ott4132702' ott5336507' ott5336509' VG-2010ott590425' 'Phyllodytes(genusinDeuterostomia ott185324' ott5336513' ott5336510' 'Werneria(genusinOpisthokonta ott1039942' 'Wawelia(genusinHolozoa ott6158686' 'Hildebrandtia(genusinOpisthokonta ott805120' 'Rugosa(genusinBilateria ott5800477' 'Pelophylaxsp.AP-2016ott5926238' 'Huia(genusinOpisthokonta ott73241' sp.RdS541ott514662' 'Hydrophylax(genusinDeuterostomia ott5800478' 'Babina(genusinDeuterostomia ott1075295' ott5346643' ott5336501' ott60920' ott5820355' 'Rhacophorus(genusinDeuterostomia ott174267' 'Sphaerotheca(genusinHolozoa ott340050' 'Ranoidea(superfamilyinsuborderNeobatrachia ott911276' 'Assa(genusinOpisthokonta ott906692' ott3620442' ott5336498' 'Tachycnemis(genusinDeuterostomia ott750024' 'Phrynella(genusinOpisthokonta ott401609' ott5336500' sp.ott968549' ott5800427' ott5800430' ott5800433' ott5800425' ott5800432' ott5800431' 'Scutiger(genusinHolozoa ott542861' ott5334816' sp.BOLD:AAH0940ott37892' 'Xenopus(genusinDeuterostomia ott465090' 'Ranoidea(genusinfamilyPelodryadidae ott7666856' 'Archeria(genusinOpisthokonta ott4948498' ott5332412' 'Plagiosaurus(genusinDeuterostomia ott3396668' 'Micropholis(genusinOpisthokonta ott5332409' ott4948553' ott5332408' ott5326030' 'Ranula(genusinDeuterostomia ott7667193' ott5332401' ott4948388' ott5332415' ott5326050' ott5736797' ott5326010' ott4948486' ott5332403' 'Actinodontidae(familyinDeuterostomia ott4948485'NAs removed.length(edges)[1] 1572edges_taxon_info <- rotl::taxonomy_taxon_info(edges) ls(edges_taxon_info[[1]])[1] "flags" "is_suppressed" [3] "is_suppressed_from_synth" "name" [5] "ott_id" "rank" [7] "source" "synonyms" [9] "tax_sources" "unique_name"is_family <- unname(unlist(sapply(edges_taxon_info, "[", "rank") %in% "family")) is_suppressed <- unname(unlist(sapply(edges_taxon_info, "[", "is_suppressed_from_synth"))) # flag "is suppressed from synth" is not updated, so it is useless for now. amphibia_families <- unname(unlist(sapply(edges_taxon_info, "[", "ott_id")[is_family])) in_tree <- rotl::is_in_tree(amphibia_families) amphibia_families_subtree <- rotl::tol_induced_subtree(amphibia_families[in_tree])Warning in collapse_singles(tr, show_progress): Dropping singleton nodes with labels: mrcaott114ott391676, mrcaott22019ott241869, mrcaott22583ott100573, mrcaott22583ott44382, mrcaott44382ott72638, mrcaott44382ott100564, mrcaott65695ott254163, mrcaott65695ott121259, mrcaott2199ott411156, mrcaott2199ott22795, mrcaott7464ott21502, mrcaott21502ott918196, Pelobatoidea ott485820, mrcaott18818ott47772, Sirenoidea ott336754, mrcaott154777ott464898, mrcaott464898ott540102
We have seen up to now how to get a portion of the synthetic OTOL. How do I inspect the source phylogenetic trees that support the subtrees?
Key Points
It is possible to get all types of subsets from the synthetic tree, as long as you can get the OTT ids!